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A dataset resulting from a comprehensive survey of the salmon population of the Oir river between 1984 and 2001. The dataset corresponds essentially to Catch Mark Recapture experiments.

Usage

SalmonLifeCycle

Format

A named list:

n

The number of years

surf

The wetted surface of the system

fec1

Fecunity (number of eggs / female) of 1 Sea Winter (1SW) fish

fec2

Fecunity (number of eggs / female) of 2 Sea Winter (2SW) fish

Year

The years of the data

c_Sp

Number of of spawners trapped during upstream migration (\(y_1^{Sp}\))

x_Sp1

Number of 1SW Spawners retrieved fron the population (\(y_2^{Sp}\))

x_Sp2

Number of 2SW Spawners retrieved fron the population (\(y_3^{Sp}\))

mad

Marked and released Spawners (\(y_4^{Sp}\))

rmad

Marked and recaptured Spawners (\(y_5^{Sp}\))

r_unm

Unmarked and recaptured Spawners (\(y_6^{Sp}\))

sample_Sp_age

Adults examined for ageing (\(y_7^{Sp}\))

sample_Sp11

Number of 1SW issued from 1+ Smolts among sample_Sp_age (\(y_8^{Sp}\))

sample_Sp21

Number of 1SW issued from 2+ Smolts among sample_Sp_age (\(y_9^{Sp}\))

sample_Sp12

Number of 2SW issued from 1+ Smolts among sample_Sp_age (\(y_{10}^{Sp}\))

sample_Sp22

Number of 2SW issued from 2+ Smolts among sample_Sp_age (\(y_{11}^{Sp}\))

sample_Sp1_sex

Number of 1SW fish examined for sex identification (\(y_{12}^{Sp}\))

sample_Sp2_sex

Number of 2SW fish examined for sex identification (\(y_{13}^{Sp}\))

sample_Sp1f

Number of 1SW fish identified as female among sample_Sp1_sex (\(y_{14}^{Sp}\))

sample_Sp2f

Number of 1SW fish identified as female among sample_Sp2_sex (\(y_{15}^{Sp}\))

c_Sm

Number of smolts caught in the downstream trapping facility during the migration time(\(y_{1}^{Sm}\))

m_Sm

Number of smolts marked and released (\(y_{2}^{Sm}\))

m_Sm

Number of smolts marked-released and recaptured (\(y_{3}^{Sm}\))

sample_Sm_age

Number of smolts examined for river-age (\(y_{4}^{Sm}\))

sample_Sm1

Number of 1+ smolts among sample_Sm_age (\(y_{5}^{Sm}\))

Source

Rivot, E., Prévost, E., Cuzol, A., Parent, E. & Baglinière, J. L. (2004). A Bayesian state-space modeling framework for fitting a salmon stage-structured population dynamic model to multiple time series of field data. Ecological Modelling, 179, 463-485.